Selected Publications

Henninger J, Hoffmann M, Kadobianskyi M, Veith J, Berlage C, Groneberg A, Markov D, Schulze L, Svanidze A, Maler L, Judkewitz B, Brain-wide hierarchical and sexually dimorphic tuning for social vocalizations, bioRxiv 2026

Kadobianskyi M, Henninger J, Markov D, Groneberg A, Veith J, Renz MA, Atabay KD, Reddien P, Maler L, Judkewitz B, Multimodal reference brain atlas of adult Danionella cerebrum, bioRxiv 2026

Veith J, Svanidze A, Judkewitz B: An algorithm underlying directional hearing in fish, Current Biology 2026, 10.1016/j.cub.2026.02.01

*Veith J, *Chaigne T, Svanidze A, Dressler LE, Hoffmann M, Gerhardt B, Judkewitz B: The mechanism for directional hearing in fish, Nature 2024, 631:118-124 (See also: News & Views article / Nature Podcast / Data / Code)

Böhm UL, Judkewitz B: Fast and light efficient remote focusing for volumetric voltage imaging, Nature Communications 2024, 15:9555

Berlage C, Böhm UL, Sanchez Moreno A, Ledderose J, Gidon A, Larkum ME, Plested A, Judkewitz B: High-speed three-dimensional random access scanning with a linear SLM, Optica 2024, 11(12):1639-1645,

Groneberg AH, Dressler LE, Hoffmann M, Kadobianskyi M, Müller J, Judkewitz B: Development of sound production in Danionella cerebrum, Journal of Experimental Biology 2024, 227(16):jeb247782 (or download the PDF here)

Cook VANO, Groneberg A, Hoffmann M, Kadobianskyi M, Veith J, Schulze L, Henninger J, Britz R, Judkewitz B: Ultrafast sound production mechanism in one of the smallest vertebrates, PNAS 2024, 121 (10) e2314017121

*Hoffmann M, *Henninger J, Veith J, Richter L, and Judkewitz B: Blazed oblique plane microscopy reveals scale-invariant inference of brain-wide population activity, Nature Communications 2023, 14:8019

Rajan G, Lafaye J, Carbo-Tano M, Duroure K, Faini G, Tanese D, Panier T, Candelier R, Henninger J, Britz R, Judkewitz B, Gebhardt C, Emiliani V, Debregeas G, Wyart C, Del Bene F: Evolutionary divergence of locomotion in two related vertebrate species, Cell Reports 2022, doi:10.1016/j.celrep.2022.110585

Berlage C, Tantirigama MLS, Babot M, Di Battista, Whitmire C, Papadopoulos IN, Poulet JFA, Larkum M, and Judkewitz B: Deep tissue scattering compensation with three-photon F-SHARP, Optica 2021, 8:1613-19

Papadopoulos IN, Jouhanneau JS, Takahashi N, Kaplan D, Larkum M, Poulet J and Judkewitz B: Dynamic conjugate F-SHARP microscopy, Light: Science & Applications 2020, 9:110

Kadobianskyi M, Schulze L, Schuelke M, Judkewitz B: Hybrid genome assembly and annotation of Danionella translucida, Scientific Data 2019, 6:156, (data at: NCBI SRA / GenBank / NCBI TSA – or more conveniently packaged: figshare)

Hoffmann M, Judkewitz B: Diffractive Oblique Plane Microscopy, Optica 2019, 6(9):1166-70

*Schulze L, *Henninger J, Kadobianskyi M, Chaigne T, Faustino AI, Hakiy N, Albadri S, Schuelke M, Maler L, Del Bene F, Judkewitz B: Transparent Danionella translucida as a genetically tractable vertebrate brain model, Nature Methods 2018, 15:977-83 (data on g-node) *: equal contribution

Kadobianskyi M, Papadopoulos IN, Chaigne T, Horstmeyer R, Judkewitz B. Scattering correlations of time-gated light, Optica 2018, 5(4):389-94

Hoffmann M, Papadopoulos IN, Judkewitz B. Kilohertz binary phase modulator for pulsed laser sources using a digital micromirror device, Optics Letters 2017, 43(1):22-25 (open access on arXiv)

Papadopoulos IN, Jouhanneau JS, Poulet JFA, Judkewitz B. Scattering compensation by focus scanning holographic aberration probing (F-SHARP), Nature Photonics 2017, 11:116-23

Judkewitz B, Horstmeyer R, Vellekoop IM, Papadopoulos IN, Yang C. Translation correlations in anisotropically scattering media, Nature Physics 2015, doi:10.1038/nphys3373; corresponding author: B.J. ; covered in a Nature Physics News & Views article

Zhou EH, Ruan H, Yang C, Judkewitz B, Focusing on moving targets through scattering samples, Optica 2014, 1(4):227-32

Judkewitz B *, Wang YM *, Horstmeyer R, Mathy A & Yang C. Speckle-scale focusing in the diffusive regime with time-reversal of variance-encoded light (TROVE), Nature Photonics 2013, 7(4):300-305; *first & corresponding author; covered in a Nature Photonics News & Views article

Wang YM *, Judkewitz B *, DiMarzio CA, & Yang C. Deep-tissue focal fluorescence imaging with digitally time-reversed ultrasound-encoded light. Nature Communications 2012, 3:928; *first & corresponding author

Wiechert MT, Judkewitz B, Riecke H, Friedrich RW, Mechanisms of pattern decorrelation by recurrent neuronal circuits, Nature Neuroscience 2010, 13 (8): 1003-1010

Judkewitz B, Rizzi M, Kitamura K, Häusser M, Targeted single-cell electroporation of mammalian neurons in vivo, Nature Protocols 2009, 4 (6): 862-869

*Kitamura K, *Judkewitz B, Kano M, Denk W, Häusser M, Targeted patch-clamp recordings and single-cell electroporation of unlabeled neurons in vivo, Nature Methods 2008, 5(1): 61-67; *shared first authorship

Porter J, Craven B, Khan RM, Chang SJ, Kang I, Judkewitz B, Volpe J, Settles G, Sobel N, Mechanisms of scent-tracking in humans, Nature Neuroscience 2007, 10 (1): 27-29

Yaksi E, Judkewitz B, Friedrich RW, Topological reorganization of odor representations in the olfactory bulb, PLoS Biology 2007, 5 (7): e178

Judkewitz B, Roth A, Häusser M, Dendritic enlightenment: using patterned two-photon uncaging to reveal the secrets of the brain's smallest dendrites (editorial/review), Neuron 2006, 50 (2): 180-183

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